PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10015256m
Common NameCARUB_v10015256mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family Trihelix
Protein Properties Length: 541aa    MW: 59141.7 Da    PI: 6.893
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10015256mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.92.1e-21158244186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W++  + +L++a++++ ++l+rg+l++ +Weev++ +  r +++++s +qCk+k++nl+kryk ++++++++  +sss++p+f+++e
  Carubv10015256m 158 EWSDAAIACLLDAYSDKFTQLNRGNLRGRDWEEVASSVsdRCEKLSKSVEQCKNKIDNLKKRYKLERHRMSSG-GTSSSHWPWFKKME 244
                      5*************************************99999*****************************9.778889*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.4E-22156246No hitNo description
Gene3DG3DSA:3.40.1160.105.1E-68291532IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536334.71E-54299532IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.20E-120301533No hitNo description
PfamPF006969.9E-26302512IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
GO:0016740Molecular Functiontransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MASCDDDFSL LGDDQSNPSQ HQHHHHHQVL HHTPYAPRRF TPKTSNQIHL SHHRRNGDED  60
DENDVVVEAS SAFHGVNPFV ADENSNPYDD NNAAVDEDED LGANRSRIGG VRVEKRQSQE  120
ELSDGGTTNG GETTPYGSFK RPRTSSSSAG EYRKDREEWS DAAIACLLDA YSDKFTQLNR  180
GNLRGRDWEE VASSVSDRCE KLSKSVEQCK NKIDNLKKRY KLERHRMSSG GTSSSHWPWF  240
KKMEDIVGNS LAMKGASDED RSGSSMGNAV KPARRYPLVT YNPGVQINNV KSKATSNPRW  300
RRVVLKISGA ALACTGPNNI DPKVINLIAR EVAMACRLGV EVAIVVGSRN FFCGSTWITA  360
TGLDRTTAYH ISMMASVMNS ALLQSSLEKI GVQARLQTAI SVQGVGEPYN RQRATRHLDK  420
GRVVIFGGIG ATLGNPLLSS DASAALRAID INAEAVVKGT NVDGVYDCHS QDSNVTFEHI  480
TFQDLASRGL TSMDTMALNF CEENNIPVVV FNFLEAGNIT KALCGEQVGT LIDRTGRGVS  540
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A2e-582925321239Uridylate kinase
3ek5_B2e-582925321239Uridylate kinase
3ek5_C2e-582925321239Uridylate kinase
3ek5_D2e-582925321239Uridylate kinase
3ek5_E2e-582925321239Uridylate kinase
3ek5_F2e-582925321239Uridylate kinase
3ek6_A2e-582925321239Uridylate kinase
3ek6_B2e-582925321239Uridylate kinase
3ek6_C2e-582925321239Uridylate kinase
3ek6_D2e-582925321239Uridylate kinase
3ek6_E2e-582925321239Uridylate kinase
3ek6_F2e-582925321239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3754310.0AF375431.1 Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, complete cds.
GenBankAY1206870.0AY120687.1 Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299115.10.0hypothetical protein CARUB_v10015256mg
TrEMBLR0I6J10.0R0I6J1_9BRAS; Uncharacterized protein
STRINGAT3G10030.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein